[docbook-apps] Catalog Files : More info

[Tristan Fiedler <fiedler at cshl dot edu>]

In case this helps regarding my previous post :

Mosaics$ java com.icl.saxon.StyleSheet -x  
org.apache.xml.resolver.tools.ResolvingXMLReader -y  
org.apache.xml.resolver.tools.ResolvingXMLReader -r  
org.apache.xml.resolver.tools.CatalogResolver -u -o classyMos.html  
GeneticMosaics_test1.xml docbook.xsl
Loading catalog:  
file:/Users/fiedler/Celegans_DocBook/software/catalog.xml
Loading catalog:  
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ 
docbook.cat
Resolved URI: GeneticMosaics_test1.xml
         
file:/Users/fiedler/Celegans_DocBook/Samples/Mosaics/ 
GeneticMosaics_test1.xml
Resolved URI: docbook.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
docbook.xsl
Resolved URI: ../VERSION
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/ 
VERSION
Resolved URI: param.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
param.xsl
Resolved URI: ../lib/lib.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/lib/ 
lib.xsl
Resolved URI: ../common/l10n.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/ 
common/l10n.xsl
Resolved URI: ../common/common.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/ 
common/common.xsl
Resolved URI: ../common/labels.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/ 
common/labels.xsl
Resolved URI: ../common/titles.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/ 
common/titles.xsl
Resolved URI: ../common/subtitles.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/ 
common/subtitles.xsl
Resolved URI: ../common/gentext.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/ 
common/gentext.xsl
Resolved URI: ../common/targets.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/ 
common/targets.xsl
Resolved URI: ../common/olink.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/ 
common/olink.xsl
Resolved URI: ../common/pi.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/ 
common/pi.xsl
Resolved URI: autotoc.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
autotoc.xsl
Resolved URI: autoidx.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
autoidx.xsl
Resolved URI: lists.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
lists.xsl
Resolved URI: callout.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
callout.xsl
Resolved URI: verbatim.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
verbatim.xsl
Resolved URI: graphics.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
graphics.xsl
Resolved URI: xref.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
xref.xsl
Resolved URI: formal.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
formal.xsl
Resolved URI: table.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
table.xsl
Resolved URI: ../common/table.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/ 
common/table.xsl
Resolved URI: htmltbl.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
htmltbl.xsl
Resolved URI: sections.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
sections.xsl
Resolved URI: inline.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
inline.xsl
Resolved URI: footnote.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
footnote.xsl
Resolved URI: html.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
html.xsl
Resolved URI: info.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
info.xsl
Resolved URI: keywords.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
keywords.xsl
Resolved URI: division.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
division.xsl
Resolved URI: toc.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
toc.xsl
Resolved URI: index.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
index.xsl
Resolved URI: refentry.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
refentry.xsl
Resolved URI: math.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
math.xsl
Resolved URI: admon.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
admon.xsl
Resolved URI: component.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
component.xsl
Resolved URI: biblio.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
biblio.xsl
Resolved URI: glossary.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
glossary.xsl
Resolved URI: block.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
block.xsl
Resolved URI: task.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
task.xsl
Resolved URI: qandaset.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
qandaset.xsl
Resolved URI: synop.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
synop.xsl
Resolved URI: titlepage.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
titlepage.xsl
Resolved URI: titlepage.templates.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
titlepage.templates.xsl
Resolved URI: pi.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
pi.xsl
Resolved URI: ebnf.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
ebnf.xsl
Resolved URI: chunker.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
chunker.xsl
Resolved URI: html-rtf.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
html-rtf.xsl
Resolved URI: docbookng.xsl
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xsl-1.67.2/html/ 
docbookng.xsl
Resolved system:  
http://www.oasis-open.org/docbook/xml/4.3b2/docbookx.dtd
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ 
docbookx.dtd
Resolved public: -//OASIS//ENTITIES DocBook Notations V4.3//EN
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ 
dbnotnx.mod
Resolved public: -//OASIS//ENTITIES DocBook Character Entities V4.3//EN
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ 
dbcentx.mod
Resolved public: ISO 8879:1986//ENTITIES Added Math Symbols: Arrow  
Relations//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
amsa.ent
Resolved public: ISO 8879:1986//ENTITIES Added Math Symbols: Binary  
Operators//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
amsb.ent
Resolved public: ISO 8879:1986//ENTITIES Added Math Symbols:  
Delimiters//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
amsc.ent
Resolved public: ISO 8879:1986//ENTITIES Added Math Symbols: Negated  
Relations//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
amsn.ent
Resolved public: ISO 8879:1986//ENTITIES Added Math Symbols:  
Ordinary//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
amso.ent
Resolved public: ISO 8879:1986//ENTITIES Added Math Symbols:  
Relations//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
amsr.ent
Resolved public: ISO 8879:1986//ENTITIES Box and Line Drawing//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
box.ent
Resolved public: ISO 8879:1986//ENTITIES Russian Cyrillic//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
cyr1.ent
Resolved public: ISO 8879:1986//ENTITIES Non-Russian Cyrillic//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
cyr2.ent
Resolved public: ISO 8879:1986//ENTITIES Diacritical Marks//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
dia.ent
Resolved public: ISO 8879:1986//ENTITIES Greek Letters//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
grk1.ent
Resolved public: ISO 8879:1986//ENTITIES Monotoniko Greek//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
grk2.ent
Resolved public: ISO 8879:1986//ENTITIES Greek Symbols//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
grk3.ent
Resolved public: ISO 8879:1986//ENTITIES Alternative Greek  
Symbols//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
grk4.ent
Resolved public: ISO 8879:1986//ENTITIES Added Latin 1//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
lat1.ent
Resolved public: ISO 8879:1986//ENTITIES Added Latin 2//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
lat2.ent
Resolved public: ISO 8879:1986//ENTITIES Numeric and Special  
Graphic//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
num.ent
Resolved public: ISO 8879:1986//ENTITIES Publishing//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
pub.ent
Resolved public: ISO 8879:1986//ENTITIES General Technical//EN//XML
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ent/iso- 
tech.ent
Resolved public: -//OASIS//ELEMENTS DocBook Information Pool V4.3//EN
         
file:/Users/fiedler/Celegans_DocBook/software/docbook-xml-4.3/ 
dbpoolx.mod
Error on line 3599 column 1 of  
file:/Users/fiedler/Celegans_DocBook/Samples/Mosaics/ 
GeneticMosaics_test1.xml:
  Error reported by XML parser: Cannot read from  
file:/Users/fiedler/Celegans_DocBook/Samples/Mosaics/htmltblx.mod  
(/Users/fiedler/Celegans_DocBook/Samples/Mosaics/htmltblx.mod (No such  
file or directory))
Transformation failed: Run-time errors were reported

Cheers,

Tristan
------------------------------
Tristan J. Fiedler
Postdoctoral Fellow - Stein Lab
Cold Spring Harbor Laboratory